From a DSI Color (original) owner...
In my experience, the best results I've had are with using AutoStar Envisage 7.05 (available on the Meade web site) for imaging, and even stacking (if the images aren't too far rotated or otherwise misaligned). The trick to stacking in Envisage is to use the Drizzle setting, and draw the boxes around 2 guide stars at opposite ends of the image and as small as the next image will travel. In other words, make the boxes just big enough to capture the (shifted) star in the next image.
I recently tried MaximDL for stacking images, and I can tell you, it is a vast improvement over the stacking capabilities of Envisage.
If you have rotation free sub exposures, stacking them properly is key to getting an image that can be manipulated further.
I always use .fits and save all uncombined images. With these settings, Envisage produces 4 files for each exposure;
1 blue
1 green
1 red
1 Luminescence
I then (in Envisage or MaximDL) stack all the blue and save as deepskyblue
then all the green and save as deepskygreen, and so on.
Then, in Photoshop, I open each one with the fits Liberator, (available on the ESA/ESO/NASA site)
http://www.spacetelescope.org/projects/fits_liberator/
and each into it's own layer, which Photoshop does automatically.
I then use Astronomy Tools Actions in Photoshop http://actions.home.att.net/Astronomy_Tools.html
to process the different layers so as to view and process them as a color image.
I know it seems like a lot, but with .fits, you have much more control over the image, and your end results will show it.
I hope this helps. If you have any questions, please, don't hesitate to ask. That's what this forum is for!
Good luck!