I have seen the same thing on occasion when using a my DSI first generation Color CCD camera.
I only noticed it though when the sky has to much moisture content or poor transparency, or in the winter months when an upper layer of the atmosphere has ice crystals floating about.
On nights with good transparency it does not show up at all.
I now use the DSI II Pro in Mono, even though I have the RGB filter set, and on bad nights, I get a light gradient in my images that is just too hard for me to remove without losing detail.
I have to agree with the last post that blames the sky conditions.
Dennis